Gluten-Free Mini Cheesecakes

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These adorable gluten-free mini cheesecakes are a great way to bake cheesecake without a springform pan! They’re easy to make, with all the classic flavor you love, and pair beautifully with all your favorite toppings!

9 Flavors of mini gluten-free cheesecakes with different toppings on a white background

Everything You Love About Cheesecake, But Mini (AND EASIER!)

I LOVE a good classic cheesecake (Lemon, Oreo, Strawberry, Apple, Pumpkin–you name it!) but they are definitely a bit of a labor of love. This gluten-free mini cheesecake recipe simplifies the prep, but leaves you with the classic flavor and texture you love! No springform pan required!

๐Ÿฅฃ EASIER, FASTER & CHEAPER!ย Since these cheesecakes are baked in a muffin pan, the bake time is less than half the time of full-sized cheesecakes! You’ll need less cream cheese & filling ingredients, which saves you time, energy and money!ย 

๐Ÿช FLAVORS:ย You’ll still get the classic, creamy, tangy flavor of classic cheesecake, and you can pair them with almost any topping you like! (We’ve got TONS of ideas!)

โ„๏ธ VERSATILE. These mini gluten-free cheesecakes are a favorite dessert for Easter brunch, Mother’s Day, birthday parties, potlucks, and all kinds of celebrations! You can make them all the same, mix and match toppings, or let guests top their own!ย 

Happy baking! xo, Emily

Gather Your Ingredients

So what do we need to make gluten-free mini cheesecakes? Let’s take a look at our simple ingredients list:

Ingredients for gluten-free mini cheesecakes
  • Gluten-Free Graham Crackers. A must to keep these mini cheesecakes gluten-free. I like Pamela’s grahams or Schar brand gluten-free grahams for these, but you can see our full-taste test of gluten-free graham crackers here.
  • Granulated Sugar. You’ll use a little for the crust, and some in the cream cheese mixture. It adds just the right sweetness and helps with texture!
  • Butter. A little melted butter helps hold the crust together. You don’t need much!
  • Softened Full-Fat Cream Cheese. Room temperature cream cheese is a MUST for smooth cheesecake batter. (Here are 5 ways to soften cream cheese!)
  • Full-Fat Sour Cream. Room temperature sour cream adds body and tanginess to the cheesecake filling. I recommend full-fat sour cream and not trying to swap in greek yogurt or low-fat substitutions. It will change the texture!ย 
  • Vanilla Extract. Another must, though you can use vanilla bean paste, if you prefer, for a vanilla bean speckled look.
  • Fresh Lemon Zest. I love the subtle brightness that a little bit of lemon zest adds to the filling. It’s especially nice with plain cheesecakes or fruity toppings, but doesn’t clash with chocolate or caramel.
  • Cornstarch. Just a tiny bit helps bind the cheesecake filling and helps prevent sinking.
  • Large Eggs. Room temperature eggs are a MUST here! (Use this trick to get them to room temperature in minutes!)
  • Boiling Water. For best results, I highly recommend using a modified water bath for these individual cheesecakes. We’ll put a pan of boiling water on the rack beneath the cheesecakes, and the steam will help give them a uniform, beautiful look. It helps prevent cracks and prevents browning around the edges.
  • Your Favorite Toppings! More on this in a minute.

How To Make Gluten-Free Mini Cheesecakes, Step By Step

As always, you can find the full recipe, with ingredient amounts, detailed instructions, and tips in the recipe card below.

Making gluten-free graham cracker crust for mini cheesecakes, step by step

BEFORE YOU START: Make sure you’re using ROOM TEMPERATURE ingredients (cream cheese, sour cream, and eggs). It makes a significant difference in how smooth your filling will get and how easily it will blend. Cold cream cheese will clump & be hard to blend.ย 

  1. Preheat & Prep. To start, preheat oven temperature to 350 degrees F. Line a light colored metal muffin pan with 12 parchment paper muffin liners.
  2. Mix Up Graham Cracker Crust. In a medium bowl, combine gluten-free graham cracker crumbs, melted butter, and 2 Tablespoons granulated sugar. Stir until evenly blended.
  3. Divide & Pat Out Crust. Add a heaping tablespoon of the crumb mixture to each parchment paper cup and use the back of the tablespoon (or clean fingers) to gently pat down the crust into an even layer. It doesn’t need to be super compacted, but should look even and sealed around the edges.
  4. Pre-Bake Crust & Cool. Bake crust for 8 minutes and set the pan aside on a cooling rack to cool slightly while you mix up the filling.
Making cheesecake batter for gluten-free mini cheesecakes, step by step
  1. Mix Cream Cheese & Sugar. In the bowl of a stand mixer (or a large bowl), beat softened cream cheese and 1/2 cup sugar on medium-low speed with the paddle attachment (or a hand mixer) 2-3 minutes, or until evenly blended and creamy.
  2. Finish The Filling. Scrape down the sides of the bowl and add sour cream, vanilla, lemon zest, and cornstarch. Mix on LOW speed just until blended, then add eggs 1 at a time on LOW speed until just mixed. (Try not to over-mix here, since incorporating extra air can cause the cheesecakes to sink later.)
  3. Add Filling To Crust. Spoon cheesecake batter over the graham cracker crusts (I like using a large cookie scoop for this!). Gently shake the pan or gently tap on the counter to remove any air bubbles.ย 
  1. Make Hot Water Bath & Bake. Pour boiling water into a 9×13 metal or ceramic pan (I like to place mine on a cookie sheet for stability) and place on the rack underneath the center. Add muffin pan with the cheesecakes to the center rack above the water bath and bake 25-28 minutes or until just set. (A small wobble in the center is fine!) The cheesecakes will look slightly puffed at this point.
  2. Cool, Then Chill. Remove the muffin pan from the oven and let the cheesecakes cool at room temperature 45 minutes. Transfer pan to the fridge and chill uncovered at least 4 hours or until completely cold. Cheesecakes will settle as they chill, and will have a slight indent in the center, but shouldn’t look sunken!
  3. Serve & Store. Remove cheesecakes from the pan (I leave them wrapped in parchment paper wrapper for easy serving) and enjoy with your favorite toppings. Store leftover cheesecakes covered in the fridge 3-4 days or freeze in a single layer up to 2 months.
Mini gluten-free cheesecakes with different toppings

Make-Ahead Tips

These mini gluten-free cheesecakes are GREAT for making in advance for parties or celebrations. I like toย make them the day before and store in them uncovered in the fridge for up to 24 hours.ย Or, you can freeze them in an freezer-safe airtight container or freezer-safe zip-top bagย in a single layer for up to 2 months.ย Thaw frozen cheesecake in the fridge before serving.ย 

8 flavors of gluten-free mini cheesecakes with colorful toppings

Let’s Talk Toppings!

Part of what makes these gluten-free individual cheesecakes a great recipe for entertaining is that there are so many ways to top them! Make them all the same, or set out toppings and let guests top their own!

  • RASPBERRIES & RASPBERRY SAUCE. I LOVE a mix of fresh raspberries with our raspberry coulis. It’s easy, elegant, and always a win!
  • STRAWBERRY TOPPIONG. Our strawberry cheesecake topping was my kids’ favorite of this group. It tastes so fresh and light!
  • BLUEBERRY TOPPING. Or, try our blueberry cheesecake topping. I like to add a few fresh blueberries on top of the blueberry sauce, along with a few extra graham cracker crumbs for a pretty finish.
  • CHERRY PIE FILLING. Homemade or store-bought cherry pie filling is a classic! I’ve had good results with Lucky Leaf brand, which is certified gluten-free.
  • HOMEMADE LEMON CURD. A little swirl or our easy homemade lemon curd is DELICIOUS. Add a little lemon slice, or a dollop of whipped cream, or a mini meringue on top for garnish!
  • MIXED BERRIES & WHIPPED CREAM. For 4th of July, a mix of colorful fresh berries and a dollop of fresh whipped cream or cool whip is easy and so fun!
  • LIME! Swap the lemon zest for 2 teaspoons lime zest in the filling, then garnish with whipped cream, more lime zest, and a few graham cracker crumbs for a key lime pie vibe!
  • SALTED CARAMEL. Another favorite is a drizzle of caramel sauce and a sprinkle of flaky sea salt.
  • CHOCOLATE OREO. Double up on chocolate with a drizzle of our 5-ingredient chocolate syrup and some crushed gluten-free Oreos. (Bonus points if you use gluten-free Oreos in the crust instead of graham crackers!)
  • & MORE! Try a dollop of Nutella with berries, some chocolate whipped cream & mini chocolate chips, cinnamon apples, toasted pecans & caramel sauce, fresh mango or kiwi, or even our pineapple topping!
A gluten-free mini cheesecake topped with raspberry sauce and fresh raspberries, with other flavors in the background

FAQ + Tricks For The Best Mini Cheesecakes

Your Pan Material Matters. I recommend a light-colored metal muffin tin with parchment paper liners for this. You MUST use liners, or the cheesecake won’t come out of the pan well. Other pan materials (like silicone or ceramic) conduct heat differently and can cause the cream cheese to “climb” the sides, which creates sinking.

Use The Right Cream Cheese. I ONLY recommend full-fat, brick-style cream cheese, like Philadelphia brand for this mini cheesecake recipe. Low-fat cream cheese or spreadable cream cheese in a tub will not work well. (It can separate, seep, or get lumpy.)

Use The Water Bath. If possible, I highly recommend the modified hot water bath here, since it creates steam that cooks them gently and gives the cheesecakes a uniform look. If you skip it, your cheesecakes may crack, sink, or brown around the edges.

Cool Then Chill. Another trick for preventing cracks or sinking is to cool the cheesecakes at room temperature about 45 min before transferring to the fridge to cool completely. This gentle transition of temperature helps protect the structure of the cheesecake. (We use this same trick for traditional cheesecake!)

More Gluten-Free Cheesecake Recipes To Try

๐ŸŒŸ Did You Make This Recipe?

Tell me all about it! Leave a star rating below when you try our gluten-free Mini Cheesecakes recipe. I can’t wait to hear how it goes!

9 Flavors of mini gluten-free cheesecakes with different toppings on a white background

Gluten-Free Mini Cheesecakes

5 from 1 vote
Author: Emily Dixon, Sweets & Thank You
Your favorite dessert, made mini! Our individual gluten-free cheesecakes have all the classic flavor you love, just made in a muffin pan! They're easy, delicious & SO fun to decorate! (Don't miss some of our favorite toppings, below!)
Prep Time: 35 minutes
Cook Time: 30 minutes
Chill Time: 4 hours 45 minutes
Total Time: 5 hours 50 minutes
Print Pin Rate
Servings: 12 Servings
Calories: 268kcal

Ingredients

For The Gluten-Free Graham Cracker Crust

  • 1 cup Gluten-Free Graham Cracker Crumbs,* like Pamela's or Schar (120 grams)
  • 2 Tablespoons Melted Butter (28 grams)
  • 2 Tablespoons Granulated Sugar (25 grams)

For The Cheesecake Filling

  • 16 ounces Full-Fat Cream Cheese, like Philadelphia – ROOM TEMPERATURE!
  • ยฝ cup Granulated Sugar (100 grams)
  • โ…“ cup Sour Cream – ROOM TEMPERATURE
  • 1 ยฝ teaspoons Vanilla Extract
  • 1 teaspoon Fresh Lemon Zest
  • 1 teaspoon Cornstarch
  • 2 Large Eggs – ROOM TEMPERATURE

Optional Toppings

  • Strawberries or Strawberry Topping
  • Fresh Raspberries + Raspberry Sauce
  • Cherry Pie Filling
  • Chocolate Syrup + Crushed Gluten-Free Oreos
  • Lemon Curd + Lemon Slices or Whipped Cream
  • Blueberry Topping + Fresh Blueberries + Gluten-Free Graham Cracker Crumbs
  • Caramel Sauce + Flaky Sea Salt
  • Cinnamon Apples
  • Toasted Pecans + Caramel Sauce
  • Mixed Berries + Whipped Cream

Instructions

  • Preheat & Prep. To start, preheat oven temperature to 350 degrees F. Line a light colored metal muffin pan with 12 parchment paper liners. Start boiling a pan of water to use for the modified hot water bath later.
  • Mix Crust. In a medium bowl, combine gluten-free graham cracker crumbs, melted butter, and 2 Tablespoons granulated sugar. Stir until evenly blended.
  • Divide & Pat Out Crust. Add a heaping tablespoon of the crust mixture to each parchment paper cup and use the back of the tablespoon (or clean fingers) to gently pat down the crust. It doesn't need to be super compacted, but should look even and sealed around the edges.
  • Pre-Bake Crust & Cool. Bake crust for 8 minutes and set the pan aside to cool slightly while you mix up the filling.
  • Mix Cream Cheese & Sugar. In the bowl of a stand mixer (or a large mixing bowl), beat softened cream cheese and granulated sugar on medium-low speed with the paddle attachment (or a hand mixer) 2-3 minutes, or until evenly blended and creamy.
  • Finish The Filling. Scrape down the sides of the bowl and add sour cream, vanilla, lemon zest, and cornstarch. Mix on LOW speed just until blended, then add eggs 1 at a time on LOW speed until just mixed. (Try not to over-mix here, since incorporating extra air can cause the cheesecakes to sink later.)
  • Add Filling To Crust. Spoon or pour cheesecake batter over the graham cracker crusts (it's ok if the crust is still slightly warm!). Gently shake the pan or gently tap on the counter to remove any air bubbles.
  • Make Hot Water Bath & Bake. Pour boiling water into a 9×13 metal or ceramic pan (I like to place mine on a cookie sheet for stability) and place on the rack underneath the center. Add muffin pan with the cheesecakes to the center rack above the water bath and bake 25-28 minutes or until just set. (A small wobble in the center is fine!) The cheesecakes will look slightly puffed at this point.
  • Cool, Then Chill. Remove the muffin pan from the oven and let the cheesecakes cool at room temperature 45 minutes. Transfer pan to the fridge and chill uncovered at least 4 hours or until completely cold. Cheesecakes will settle as they chill, and will have a slight indent in the center, but shouldn't look sunken!
  • Serve & Store. Remove cheesecakes from the pan (I leave them wrapped in parchment paper wrapper for easy serving) and enjoy with your favorite toppings. Store leftover cheesecakes covered in the fridge 3-4 days or freeze without toppings in a single layer up to 2 months. For best results, store the cheesecakes without toppings.

Notes

  • Gluten-Free Graham Crackers. Regular graham crackers are NOT gluten-free, so make sure to only use certified gluten-free graham crackers for this recipe. I like Pamela’s and Schar brands best!ย 
  • Room Temperature Ingredients. Make sure you’re using ROOM TEMPERATURE cream cheese, sour cream, and eggs! It makes a significant difference in how smooth your filling will get and how easily it will blend.
  • Use The Right Cream Cheese. I ONLY recommend full-fat, brick-style cream cheese, like Philadelphia brand for this mini cheesecake recipe. Low-fat cream cheese or spreadable cream cheese in a tub will not work well. (It can separate, seep, or get lumpy.)
  • Your Pan Material Matters. I recommend a light-colored metal muffin tin with parchment paper liners for this. You MUST use liners, or the cheesecake won’t come out of the pan well. Other pan materials (like silicone or ceramic) conduct heat differently and can cause the cream cheese to “climb” the sides, which creates sinking.

Video

Course: Dessert
Cuisine: American
Diet: Gluten Free
Keyword: cheesecake
Serving: 1Mini Cheesecake (Toppings Not Included) | Calories: 268kcal | Carbohydrates: 19.8g | Protein: 4.1g | Fat: 19.4g | Saturated Fat: 10.9g | Cholesterol: 78mg | Sodium: 168.1mg | Potassium: 71.2mg | Fiber: 0.8g | Sugar: 14.2g | Vitamin C: 0.3mg | Calcium: 58.4mg

One Comment

  1. 5 stars
    So many great ideas! Not only are these delicious but they look so impressive and cute! I can see these being a hit at a get-together.

5 from 1 vote

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